Tuesday--Catch up day

Tuesday May 23 will be a catch-up day for Assignment 6. If you are already done with assignment 6 you do not need to come.

Assignment 6 Part 1 will be due Thursday 5/25.

Include External Image in R Notebook

To include an external image (i.e. screenshot) in your R Notebook, include a code chunk like this:

knitr::include_graphics("~/Desktop/Screen Shot 2017-05-02 at 2.54.52 PM.png")

Java Errors in R Studio

If you are getting on of the following error message when opening R Studio

1. Close your R session and open a new R session

If your R session will not close use Htop to find the PID number for that instance and kill it.

From a terminal window:

Kill 1425

2. If the problem still persist reset the R Studio desktop state

When you run your R Studio diagnostics you should see lots of Error messages at the end of the file.

From a terminal window:

rstudio --run-diagnostics
tail ~/rstudio-diagnostics/diagnostics-report.txt

Reset R by moving your Rdesktop info, then re-run the diagnostics

mv ~/.rstudio-desktop ~/backup-rstudio-desktop

Late Policy

We will pull your repositories shortly after the due date. If you want to turn in something after that time then you will need to email Gina and request that she pull again. There will be a 10% penalty per day.

BLAST results

If your BLAST run did not complete, you can download the output files:

Fly versus worm Worm versus fly

There were run with default parameters, output_fmt 6 and culling_limit 1