BIS180L

A Lab Course at UC Davis to introduce Genetics and Genomics majors to Bioinformatics

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Labs

This page is being updated for 2024. The 2023 pages are available on the archived site
Date Topic
04-02-2024 Cloud Computing with ACCESS-ci and Jetstream2
04-02-2024 Set up git authentication
04-02-2024 Turning in Assignments
04-02-2024 Just Enough Unix for Bioinformatics
04-02-2024 {Optional Review} Introduction to git
04-02-2024 {Optional Review} Introduction to Markdown
04-04-2024 BLAST Part I
04-04-2024 Bash for loops
04-04-2024 BLAST Part II
04-05-2024 "Gitting" around a bad add
04-11-2024 {Optional Review} Introduction to R
04-11-2024 {Optional Review} R Practice
04-11-2024 Analyze BLAST results in R with Tidyverse
04-16-2024 Web Only version: Multiple sequence alignment and phylogenetic tree construction
04-16-2024 Multiple sequence alignment and phylogenetic tree construction
04-18-2024 Rice SNPs
04-23-2024 Rice GWAS
04-25-2024 Make a web app with Shiny
04-25-2024 Genome Assembly Part I
04-30-2024 Genome Assembly from PacBio HiFi reads
05-09-2024 CpG Methylation Analysis from HiFi Reads Centromere Discovery
05-14-2024 Working with Illumina Sequence data
05-16-2024 Viewing Illumina reads in IGV; finding SNPs
05-16-2024 Illumina continued: analyze a VCF file in R
05-17-2024 Basic Guide to the Screen Command
05-21-2024 Differential Gene Expression from Illumina RNAseq
05-28-2024 Differential Gene Expression: Now What?
05-30-2024 Genetic Networks 1 - Clustering
06-04-2024 Genetic Networks 2 - Co-Expression
06-06-2024 Metagenomics